Scaffold Ga0115549_1004450

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1004450
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7157
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050274	Metagenome / Metatranscriptome	145	Y
F104749	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_100445018	F104749	GGA	MSNQLENNIRNGLTDHIAQFEASRDRLRAIHNMERESRSKARKRRAILQTVRDLIESVFMALGIFLSVAIVVAVLIFAAFGFTAPDGFGIQLPFCGYFWESIQ*
Ga0115549_100445019	F050274	GGAG	MKHEKQARALIRKMVRRAKQDWTTCIFVTPYGENDLVNEGQLERQIVDAVFSCDETTITFNNMTTGRNLGSVLVVLEYDREPCEILSDYTANEYTQRLIDHIGV*