Scaffold Ga0115549_1003486

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1003486
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8385
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018014	Metagenome / Metatranscriptome	237	Y
F033992	Metagenome / Metatranscriptome	176	N
F102084	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_100348620	F102084	N/A	AILIVMNTDKHTLNDTNSEKTNTQLMISPLPNLIATGLIFLSVFAIILAGYIHGHMSISAVYKTLNP*
Ga0115549_10034868	F018014	GGA	MIVNLTKNEIKHLVYLLGKGDADYPELNQNLLNKLGSLIEVCTCKEKNSETEQ*
Ga0115549_10034869	F033992	N/A	MAHEYDLTEQSDLDMLDEVDGEYYNWDQNHSGYLWLTDACVEKYGLEKGMDVEPIDWDIWDDEYYAEYKEMGLKWDLPIQQYASVHDKDGKYLRDCTYEDWEVCKANGIKEEMLSDEGCEIMGWCDG*