Scaffold Ga0115549_1001399

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1001399
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14533
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046384	Metagenome	151	Y
F055737	Metagenome	138	Y
F101156	Metagenome	102	N
F103281	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_100139913	F103281	GAG	MCETQGLKNDIIYQFYYITLYDYEKGTELDELRIILYDYEDKEMYLECEGIKLAIEQIEFTQLIKNIIDDNERD*
Ga0115549_100139918	F101156	N/A	MKKEVTVEYDNIALVVVGEYEKGQDGSYMYPDFSSDFNCFKVLCGGQDIIDILEQEVIDELENQAIEIIEEQW*
Ga0115549_100139928	F046384	N/A	MKNQPFHETVRDLYTFKNMQIDALQKALSKANTRITNLETFIFELCHKDCPEDYKDIVKNEVLNDFTRD*
Ga0115549_10013995	F055737	N/A	MTRNVRVAISWCLKNDIKVIVKPLTRTRRPEVKLEIHKQGRIQIGNETYRQDKKLGDKIQELYLYLYKTLR*