Scaffold Ga0114957_1045982

Overview

Basic Information

• Taxon OID: 3300009073
• Scaffold ID: Ga0114957_1045982
• Source Dataset Name: Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1999
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Bantry Bay, Ireland
• Coordinates
  • Lat. (^o): 51.64
  • Long. (^o): -9.71
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013269	Metagenome	272	Y
F024709	Metagenome	204	Y
F104363	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114957_10459822	F013269	AGGAG	MVTADAFPLPANVNDKRGGVRVCINVHEGSDGFALQLVFPIVVGRLYVVADLDVRIATCDPMVEVTFVTLLRLTQGLDYDGDLLAQAGHELAFAS*
Ga0114957_10459823	F104363	GAG	MDNSVTGNMDMLDRGYPRGVHDDVFHGCEPGLSATSSRWRLPFVPWYMLLLLSKKAHHQVAWEILQGFPGVVFQPVVEPAHLSAIAVTRLA*
Ga0114957_10459824	F024709	N/A	RTAVERADGRGVESALSIIGQAVARAVDGDANYGRFAQHLEAIQPEEKPTPARFNAQSNLGRRTHEGGGPSTGAPHSARNTRARSVSQESAASVGASRDSRLDSRRREEEE*