Scaffold Ga0115030_1007107

Overview

Basic Information

• Taxon OID: 3300009072
• Scaffold ID: Ga0115030_1007107
• Source Dataset Name: Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4323
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Sidmouth, United Kingdom
• Coordinates
  • Lat. (^o): 50.677
  • Long. (^o): -3.24
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036534	Metagenome	169	Y
F039926	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115030_10071074	F039926	GGA	VTPMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDFRFALVAFDLVSDSIWCEGVGVGVGARGGRTWPGGDYLRGALGWEKWANRRTTNKARLHKHTQAQATQPLHRGPPSPIPTAFQQVMGPEPGL*
Ga0115030_10071075	F036534	AGCAGG	MEGGAAGMGGIKIDKLTETNFHEWRQRIKIVLALRDLDDMLDEDGKPTDAEDRELALWKRRDTKASAIVGLTLRLEESSKKQPRHNTKRPQVPL*