Scaffold Ga0115030_1001645

Overview

Basic Information

• Taxon OID: 3300009072
• Scaffold ID: Ga0115030_1001645
• Source Dataset Name: Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10087
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Sidmouth, United Kingdom
• Coordinates
  • Lat. (^o): 50.677
  • Long. (^o): -3.24
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052352	Metagenome	142	Y
F086530	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115030_100164512	F086530	AGG	LQFLNCFLKAGNDNDVSDGKALYLLPEFTKGDLKREMYTIIPSLQGGRSGEVSSQMELVNWLLRKYADEQSLSDQTALFHGATQEDGETENDFYVRLRGLRRLSGYIHTEGQMKSRYMHGLGLEVGADVREHNTGNMPMDLLVQHAQRKGDVSRRRHEEQLAEEA*
Ga0115030_10016458	F052352	N/A	MERMLRLTQAEERTEDALTAAEQDVEDRHALIPAVRRQLGKAQATYKRAFDARTKKKNNSVMAGDWVHQDAHSRCPNKLGFKTQGPYMVLQTYGYRFLVESPTGLRTVSSAHVTSAPAPTARDAKWSWALKAQAHFEVGDQFKEGPEFVFDRFRNHGWDDEGQLKVLGEWFGFPEQKATWQRASFHSREAICTYCSRKRVQLPAWTQEGVFFLTKSESGP*