Scaffold Ga0115566_10231008

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10231008
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049595	Metagenome / Metatranscriptome	146	N
F064194	Metagenome / Metatranscriptome	129	N
F067690	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_102310082	F067690	AGG	MDKMIELEFKLRDGGSYYLCDTKFSVMSGRIRRQINAIDHVVEHYASVNGIAVKHSYEEVVEMIRKAKGAK*
Ga0115566_102310083	F049595	AGGGGG	MQQVDYRFENHGSIFLCQPLNGAAKDNLDECCDAVLGTFHIRWGDALVIDHRFANDIAQQLIEEGWIIE*
Ga0115566_102310084	F064194	GGTGG	MKTYLVEINAVVWKQIEVRAESVEAADTLAHELFNLAADGCPERYDQQTSQIWEDDSPNIRNWKEVM*