Scaffold Ga0115566_10114401

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10114401
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1721
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002412	Metagenome / Metatranscriptome	561	Y
F004715	Metagenome / Metatranscriptome	427	Y
F047630	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_101144011	F047630	N/A	RIITYMPYYYVLARKGSECHRYYVQLDPESADVLHDVLVSRYDLVQVCAVPYSSVEPDIVISPAP*
Ga0115566_101144012	F002412	N/A	MTVCAVAFHENTFAVFELREELQMLYMNMWELLHQLEYVTADQRPVVYSDIEHIKSEIARVVNELIQHDKSQHP*
Ga0115566_101144015	F004715	AGGA	MIYTDQEHQWLSKPAKKKRVSNQTADGSAPIEEDDRLWQRCWGIQTTIEVDGKKYTVPIQL*