Scaffold Ga0115566_10112091

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10112091
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1741
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008887	Metagenome / Metatranscriptome	326	Y
F016204	Metagenome	249	Y
F033631	Metagenome	177	N
F051564	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_101120913	F008887	AGGAGG	MDRGCCNECGYKADYIVDNNNYADNGYKDLNQVPTDKMLCGVCYEEEVANV*
Ga0115566_101120914	F051564	AGGAGG	MPIPKQMLKEWCETYEEAIETLDYLANRSVDTAKEEIKESLEDYFIDNGLMSEDEFRKEVSNG*
Ga0115566_101120917	F016204	AGGAGG	MSIEQYVNVLDIKFYVSDEDGNEVLNKDGTIKQFDFKGRLKPLEYLCEDMTVEDLEEVKNGKCM*
Ga0115566_101120918	F033631	N/A	GGRLMKKYLVKVYNKVDNSYRVAMETPDLDMAEDKMNRLSNQGHLVKIDLKPNETPDHLKNVSKDKLETLAEIFKPRL*