Scaffold Ga0115566_10077447

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10077447
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2179
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F044529	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_100774472	F044529	GGA	MLIQEIIYLGFVVYGVISLLMTMAYVSLKLDDKRLREKKKDLYDVTDFESRLKEGEILNWCNLFTGTHHFDAPADDGSFVCLKCWTYEGYEMEVV*
Ga0115566_100774473	F021778	GGAGG	MGMPKFLEDYTTVDELISKMNKEYPECRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAPKKSIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNTANAANWYAQALGELDIPEAKLTIDNMKSVKNKLQDIATNLQKEGA*
Ga0115566_100774474	F020913	GAGG	MLGIFGRNKPLSVLEDLQLDYNPSEFRKVQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEICNCSNKQYAKLKKNGSPFMHKAYIKDWAL*