Scaffold Ga0115566_10056605

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10056605
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2637
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022109	Metagenome	216	Y
F071753	Metagenome	122	N
F072838	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_100566056	F071753	GGAG	MQTVLSKEIVGYGSYNSYVNKKGHPTNIQYSFERIATNNRSIHIYGWDTDTPIWNINYTEDGYNYKTVGCVTAFPMDEVQASIKTSSGVDFTVARNDPYEAFVAIVDAVSATTTEEEDQAFYQQYGY*
Ga0115566_100566057	F022109	GGAG	MRYLEIESIWDKNGDSILDRRSEHQELTFNVNHNKGTSKCYLFEDQAEDKIWIMSVGACIKSHYSDADYAETERLSKTLPLNHGDVVRIKKRGSKEYSVHVNGNYSDLGYLVPINK*
Ga0115566_100566058	F072838	N/A	MEIDMKSYSEEMYHYKNIKTKRPSVGYNTEKERAYARLSGVSDYEVYYKNKLIGEVYLVGTNLANWGYCSLDYTVKGHAFIKGEAVRELYEGWRENQKIQNHYNTRNVC*