Basic Information | |
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Taxon OID | 3300009071 Open in IMG/M |
Scaffold ID | Ga0115566_10056366 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2643 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002318 | Metagenome / Metatranscriptome | 571 | Y |
F030249 | Metagenome | 186 | Y |
F056530 | Metagenome | 137 | N |
F105916 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115566_100563662 | F002318 | AGGAGG | MKAKDYKSITNILESQNKGKKFYDFMDMEDVKYRIKEEIVPLPKQYFNNIVKLIKGEK* |
Ga0115566_100563663 | F105916 | AGGGGG | MKDIIKQVKNDKGIIFNAKIYKDKIEKDWFITFYDSRYKEGFNKLGQGIASYYVGTILNRKGYYGSLNKDSGLNLYGGESDWYIDYKPYQKLVKFLEKKGLVNDKK* |
Ga0115566_100563664 | F030249 | N/A | MTRNKFGLPLIFDYVKLTDDRRLKNLEHMKYNCPKGWKELWSKKLDQLRKNIHDRKRKTLN* |
Ga0115566_100563665 | F056530 | AGGA | MLKDFKIEKNVPIIKDARKGQKYTNPLYLIAQKMEIGDSIRFPLPEYVHVNYDKRDEYSNEEWEDLLNKKCDFDYYSNSPKSLRRYLIELYGQGSVAERSLKNIPEEKTNKDGVRVWRIK |
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