Scaffold Ga0115566_10022410

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10022410
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4597
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004513	Metagenome / Metatranscriptome	435	Y
F011524	Metagenome / Metatranscriptome	290	Y
F014035	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_100224101	F014035	N/A	KLNEMIAKEKGTSVKEMAADPDAPAPAKKTTKKADAKKTTAKE*
Ga0115566_100224102	F011524	AGGA	MPVKYLLYIDIILKNNITIHYNIAKELQTKKQETIARFLRKTIEQNYLKIKSVDMKFDIPTLKKDMESRTSLVMSKTFKDNV*
Ga0115566_100224107	F004513	N/A	RMKYIIILLLLVGCGIKPSATCVVDLKKETVKEITDSCVENPHVGVKKEF*