Scaffold Ga0115566_10020308

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10020308
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4860
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F038411	Metagenome / Metatranscriptome	166	N
F040922	Metagenome	161	N
F044429	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1002030813	F040922	AGGAGG	MIDLNFKLDRSFPPTRKVSTLGHGNIDCYDIGDHYIFNTYLVDKLRMPDTRAPRLGRAVSDLHHALAYCDLEHAKKLSTMTVGELLNLFGEAEELYASF*
Ga0115566_100203084	F020533	N/A	MFFMQDAIMLEQDDLVAEFERKVRDKKIFFEVINPGQNESKGVDIEAMLEENNKLKLELRIWKNIVEKSITADARGGFNG*
Ga0115566_100203087	F044429	AGGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNTPLTTGFGPFPTKEDADNFRAQYYYDQIVIADIVPLNAVLPDSATELDIDFVPEGKVVDISSKINPNKH*
Ga0115566_100203088	F038411	GAG	VYINCREIGETMTEHTEKVEQVRRRNRLDNWRKSIKFSLGETINNGEDVKHTTIYNDDSQTIEYLKSDRKTETIPSPHSEDDLVDLMMRGETATAEAIIRKLAQGEDNE*