Scaffold Ga0115566_10017252

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10017252
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5346
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007974	Metagenome / Metatranscriptome	341	Y
F043289	Metagenome / Metatranscriptome	156	Y
F044789	Metagenome / Metatranscriptome	154	Y
F057993	Metagenome / Metatranscriptome	135	Y
F102835	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1001725211	F057993	N/A	MRYNDVEFKPATENRHAEIVAWTYNEELDKESCITLCWIMGDHEGYYMKTVGDRYVEYEDMEALNHVAKYAMRSLNVQFEFEEKL*
Ga0115566_1001725212	F044789	AGGA	MNANVRAILGLDEPSPREVTRNRKGVMSYSSKDAGCIQLFTNDSWERNKKYYVPNGPRSCVKNFMRG*
Ga0115566_100172524	F007974	N/A	MSKRAKPGADLRAPNPTKRKLMGRSRGPLVFNEHVGYKVTQKIDEAITNNREK*
Ga0115566_100172527	F102835	N/A	MKVKIKAELDDEAFKTGDFIQELGKIQEEYLDKLVAKVKKEKWIEGMDDEEIRDWLFDYCFNGWNNDKDGFEDTFTECIDKCSKYEVE*
Ga0115566_100172528	F043289	N/A	MKITIEHYEEKVTYESKHDSMGMTVLTEKLYGLCVAAGYHPDSVGKCFFEKGREMTEHLYPDDKMEEEDAMCYLGKGETISILSRYNEERKFTIIAKDCIEYSFKDYGHVGCSRNDDGSLHSVDPSGGPYIAVGTNLGDVHKDLDGLIVTKIKRSDYKSGSYYLTVKDYEYKAPAWVNWPV*