Scaffold Ga0115566_10010700

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10010700
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6974
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y
F059942	Metagenome	133	Y
F070089	Metagenome	123	Y
F074757	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1001070010	F030886	AGGA	MSYHGNPPPDYNQVGIAVVNPLHRIEQKLKKVQDILDNISDVSVLTANDLKIKIQRVMDGG*
Ga0115566_1001070012	F041168	GAG	MKQAKVKRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDNDGNVSQFWHAGVIPKGTGVSCTHRERGMKHTFWTVTDPESDLIGKVFVIGHTFKDRTEEEFEKFEYSNISPTLKYSILAEKPLTK*
Ga0115566_100107002	F074757	N/A	MLKWRQKIWFEKKPLVGLVIRVEDNPWQSKREVSTNEKTFYYIKWVQDGPGSRYGRTFHSTDGYFLRNDLKFVKKGDFK*
Ga0115566_100107004	F005547	N/A	MYKEKEMKVWVMQGSYEGEVFSSVHFTQKGCALACIADVLEFHGVDSAEDALRVMNDCYAYTETDGEQTEPFEWDYEKMKNMSSKELWKIFSEWTEISWDRMADRSYNIDAQPMEIQG*
Ga0115566_100107006	F070089	N/A	MVRVQCSFLDDFAVKVGDLVKFESVLNDSMDHHTVEHGLVIQLSKTGHDTLSAQVLFNDGETWWVDSGRLEVVSESR*
Ga0115566_100107007	F059942	GAG	MKVGDLISFKPINFGLEDWSNPCIVISEYESPNEGLWSIWCEGVFCVIDDTNYEIMYLTGS*