Scaffold Ga0115566_10010639

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10010639
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6996
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F024920	Metagenome	204	Y
F058166	Metagenome / Metatranscriptome	135	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1001063916	F024920	AGGAG	MNMIEELLDKYHEDDFDDLLIQIIKHMKEVKELREMDREQD*
Ga0115566_100106392	F058166	AGGAG	MDILGGMSNSTEGQQVYLAFKTADQQFFVNGKTPIDFKYLQLDPATFRSGWGRYAGEYQYVWDDNFGKASTKPGDDWKRAFSCCVMPHGHEHALIWSRFTFAESNAFNRILSGFWNQMDASSDSLPVVEYKGSKEIQAGKGRSSELTFEFSKFAPRFDNFVIPAFYDKEDEEVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF*
Ga0115566_100106394	F002221	N/A	MYKHGGYMSNYYDEALKDKLKQLRILEAEANVKWGNWKRIYKMVGVDFEIKFLKAEQLLKTSLQKDTIKKQISMVDMMIRAYEQLNIKCEESGYIMIQPSARCFTFDKKTALICDTDDDKPVLELIHKDEKDIMVFSIEELLRCIPQDFIRAKEILSKLDKSVNFQRIDYD*
Ga0115566_100106398	F099546	GAG	MSNKPQIDVSQLKRQIDKGKSLNEVVMSLGKSKSTILKVANENGLKFDKKSHWANL*