Scaffold Ga0115566_10005913

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10005913
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9598
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y
F031249	Metagenome	183	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000591310	F054844	N/A	MTIGTLVAFRGSVGLVMGPCKKRWAAVDDVWVKWTDEPKAKIEAGRFLEVLNASR*
Ga0115566_1000591314	F017285	N/A	MAGKERAAGNENDARWYDERAERYRQQYLKRTKIDLATGEKVTNKAAKTARMQNVTCGYCKERGHTRRTCPHVKRDKQIFVEETRRARIAALETARETGIGLGSMIPIRSSGYDVDGEWRSDMLTLRYIKSIAWDTCTSSAPFLAAYHIEARKIAASNQARWTSCDQITKLVQVHDAALRYAAAENEPAPMSSLVPTLDPPKGWLQPTEQSLTKAIKREFPTTGTKYNKQRGYDYAYPSGVTKDVIRDLGLQEHYDHVNWT*
Ga0115566_1000591319	F014672	GAG	MGKFKPGELVRVVEGTHQDGMPEHRTGMIIEEGETSKSYSRAYTIIFLGTDLHLKFHESFLEPFITS*
Ga0115566_1000591320	F009562	AGGAG	MLAIPLIRTEDDSKLTPIERTTLACEQVITALMMQGTLSDPAVSAEERETFTTLSVATTIPAEA*
Ga0115566_1000591323	F008590	GGAG	MQIGDLVTYWYQRPRWRKGQSVHVGLIIETGKFTGNRDVKVLWTNEPEPLTECSQHLSLVDDSLTT*
Ga0115566_100059134	F004771	GGGGG	MRNRPRVGDLVKMHTHDTGLVGIVLERHPKAISTTPAQLGIMWTGGSGKIDWEPEGWLEVVSSA*
Ga0115566_100059139	F031249	AGGAG	MTKVGDLVRVRTKHHGEMLGVVTEVTKDGVRIKPQAHPRDIVALPQDVKVLVSV*