Scaffold Ga0115566_10004822

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10004822
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10680
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021673	Metagenome / Metatranscriptome	218	N
F049283	Metagenome / Metatranscriptome	147	N
F072845	Metagenome / Metatranscriptome	121	N
F090257	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000482211	F072845	N/A	MSGEKLTINEDGLVTSIEVTDKDYDFGGGYTYHPSPYVLPVSEDIATTNIFSMSHDIDGKMRITGEDADIEINGISLKDTLHNLQERMAILQPNPTLEAEFKELRDIRQKYIELERTLLEKKQMWETLNKDD*
Ga0115566_1000482215	F021673	GAG	MKRVYSVTICGKNDCVTMTEAEASMLAMKYGKHLAMYDMTKRHGVKPEFLHKELRREQREWRGVSFSKGIKTGSFGGAAPVNWTYDDLINVNLEALNG*
Ga0115566_100048226	F049283	N/A	MKMYSFKVGKMKDVQKVVHSAYDIWAAAVCAQRINKGYYKEDEFNADGECVREANRTVARNALALGGKITVEDRCKGAEIRKFISSRLMVTAITRKLNDFQQSLSRAVELDEFVVPQDRMLIGIVNSQIAQYERAMREEQLTKDYVYGTYGKIKERLDVELKPVSRFWLTDWGTFRYNAITKDGYKTSFYYRDKLEIGDAVKVRGTVTKHTNDTTTINRIKVL*
Ga0115566_100048229	F090257	AGG	MFKKKEDLDQLFGDNESISALVVAICATMFDNGVRIIPIGGLMRLLGVPKEKAEKHDDKAFELGDDFYDQLEEMGFEKIADAELQLTNKKTIH*