Scaffold Ga0115566_10003815

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10003815
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12101
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010695	Metagenome / Metatranscriptome	300	Y
F011679	Metagenome / Metatranscriptome	288	Y
F020879	Metagenome / Metatranscriptome	221	Y
F087182	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_100038154	F011679	GGAGG	MIKDRNTTVLSKDVQPTESLKRFIKRCTGAKMTPVKGNNNAFWVSGDKRGDYYEQKYYKIVFGPVTQVSYTPNRSEKSGYGFDIQTSGDLNGWQLMGEYRKMIKETMENYKEKNA*
Ga0115566_100038155	F010695	GGAG	MTNLNTTNQSKDKIVSVPGYHIGSLTCYNANDEDGESVNIQLTSLEEMWYGHEENIDHPEGSEYPVSINVPHMKVMRDRVIDSVLNRTGIDIREFDSIIHASTSPGRDKQGNIIEHANENIIRNV*
Ga0115566_100038157	F020879	AGG	MDCMDSKPGNIMTKKQKQKIHNIVQSTLKIVGCAFLFLGMTMALGVNPHMELTSYLLLFAGTLMIIVHSFRDNDHMYLLVSSAGFVLVGGAFLDTETAIMIANNYGIALTEEQGWFAKYGKVFVEIIKAVT*
Ga0115566_100038158	F087182	N/A	VGQYTDKINAIAEDFATIDFYEKLSALEARNGMMIIHYNHGGKKITFSRDSEYEGTSGKAGDEITIPAIDKDYISLKEKYQSETWGAQLGKWWKKITNKEYNPNTWWIDND*