Scaffold Ga0115566_10002031

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10002031
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16961
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (57.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F012834	Metagenome	277	Y
F015946	Metagenome	251	Y
F027349	Metagenome	195	N
F043684	Metagenome	156	N
F048298	Metagenome	148	Y
F084262	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000203128	F012834	N/A	MNSERFTDTAWTTGNFNKATISPSQTALNNWTYFLKYQLIPHLKFKPEKPSISFKTGTFVHEWFQNILMGNAKIEDVEKHFKTHIEQFKFSEKHRMKSLFLLKNIKGYVQRHLDAIKEISTWGEGWGIEKPFSDWYDNKYLGQTLNIANEGFIDCYNDDLEIITEHKNRFGSAKLSPLKKEPKKNVKPNENRIGDWTYTKSQKINKPQFTHCIQVAVYSKHYNYKYQPYLIYVGDSDYTIFTKDNCWELSNSGLEYFFEKFIQINIQRQEMLRIANGDIRKLAIMIGVDWSEIRNYKNNFLLENYHEEDMYKLETFYEQL*
Ga0115566_1000203129	F043684	N/A	MTIESVELKWEEIFSGAFTGLLRQSESMRNNIKWGHGAKFSIYEEWGRSISGTICEMALSKKMQSYFSHSVNNYFGKDLIINNKPVQVRSQLHSKQNKSLIIRKPFNHEDYYFLVGDDTPKYYFYGYILARDVSLVGNWTNFNNDNRPYVWSVPFDKLKPIDQFQYEK*
Ga0115566_1000203134	F027349	GAGG	MKVWNIRVTDRNGFDSYSFFQEDEPTNQQLEVIKNIYQNSGRYIPEDIEDIDVEIKGSFDNQNIPTYDQLIDNLKNKYEVKK*
Ga0115566_1000203136	F048298	GAG	MNKQFLFWREVNKRVREECTIEAKDLDEATKLHNEGYCDYVEVDTLDEDEILDEGTTESEVK*
Ga0115566_1000203137	F084262	AGG	MYIIDYPNQRIKKFSNNELEDFLNTIVKKRWIFIKDKNKAKKFINQVSLNRKGNK*
Ga0115566_1000203138	F008684	AGG	MIINNDNFDMACQLADDIYFKFIDSLDNKKASEFVVPDKDNIGSTKNTEKGSELYWDIENTIKNTLDNRKV*
Ga0115566_1000203139	F015946	AGG	MTKYKIVDWMNNRIFPDKIFKSFEHGWEYIYSKFDNNEDHQEYYVVDVNQKERVSNDY*