Scaffold Ga0115566_10000156

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10000156
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55495
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F066153	Metagenome	127	Y
F101909	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000015612	F101909	AGG	MFGKEMMMTEDVQEEKKNYHKRRGMSERILDVLSDGYWHSVQEVSKRIGYLETGTSAGIRTLRKKNYGKKNVIGKWLGGVYHYRLEEGEYGETPLSADLDRDIPVSSL*
Ga0115566_100001568	F066153	AGGAG	MEDVQKTFMDWLDTCPVVEHRSIHGVQEDSATWIYTVDFAVLKEKDNLQPPRGH*
Ga0115566_100001569	F024653	GGAGG	MSRDINTIPTVPRHIVSYKIYAEWSDNPKMVQLNHEMDSDIENSFNQWLQEIEEEENS*