Scaffold Ga0114973_10233469

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10233469
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011753	Metagenome / Metatranscriptome	287	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_102334691	F011753	N/A	KTFKNWAEENVEKTYWCEKSLVGPGYAGRCDAYVRLRGIGDAVIDLKNRKINKRYNTSPFYPTDAQQLWAYRNASENPQCACVSVVLASNDPEYIKHHQWGEDELYQAGIAFCAMQKVWSWVKEYTPPGMKL*
Ga0114973_102334692	F039994	AGGA	MENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVYDYHITRCIKHAVTAQQQIHLNHPNPDESGENAIDHLERAVVRALFSWMQLKKGLPRL*
Ga0114973_102334694	F039993	N/A	MKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDL