Scaffold Ga0114973_10223578

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10223578
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1022
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F023347	Metagenome / Metatranscriptome	210	Y
F033037	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_102235781	F023347	N/A	DIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDTLVELYKLTYALSFAIGARNEA*
Ga0114973_102235783	F000441	AGGAGG	MKMSDEYINDQLNKAQKLLWGGSETENIAAHNIISKLIQDRMAWEEGTNV*
Ga0114973_102235784	F001019	AGGAGG	MSNYEPSLEILEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETEELTKAVLFCYNLGKDFTVRTLAEWNERELAYEASR*
Ga0114973_102235785	F033037	GGAG	MKPADKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYRQNCTIDEMW