Scaffold Ga0114973_10164424

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10164424
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1227
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_101644241	F027756	N/A	MKLKDLIDRKILYLNFPINKYAIQEGKVTEISPSEKCIKINNDWHLISNIRIIELFSEKERPALGFN*
Ga0114973_101644242	F032548	N/A	MKHNQEMEKAIRLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK*
Ga0114973_101644243	F036564	GGAG	MKLGRVTLDINYIVDMDNEDMVKHAIESLYEDLMQGVKYGNITDWIDVVEDKNATEDMIPEFLLDKEND*
Ga0114973_101644244	F064403	GGA	MTNPRSKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCKLYSEKYEINPKYMAEQFEFKF*
Ga0114973_101644245	F044916	N/A	MGKKKIEKSRIEKGLAKEEKTFALMSKKIIDAIKDEKELRAFAKTSLEILYKENPNLFSDHAKLKLNKK*