Scaffold Ga0114973_10106717

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10106717
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1588
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F061848	Metagenome	131	N
F072334	Metagenome	121	N
F082693	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_101067171	F061848	AGG	MNFLIAKIFTAVTISMAGLAYAYDAYNAPSALPVTPPVTVSLAPMATSTTTTAAPLTDCQYALQLASQAGWPLTEMGTVARIIYRESGCKADAYNGKDTAGGSYGLYQINGYWCKPNKYWPTGWLQAQGILQTCDDLLDPKINTYSALAIWHNSGYGPWALPNP*
Ga0114973_101067172	F019829	N/A	MTDYPIPDPGLTERTRQMYTEKYAETFKSFVDEVLRPNHIPAPKPVDHSILLDELAILREKYLSGTPSDEHKFAAAVITAAMAVIIGI*
Ga0114973_101067173	F082693	N/A	MAQIDERVTIRLNSQDRAEINYLYRELETQTKYLQARDTFTHTYTPKASFTGLVAEYAFAKWFGYDYVIKPYDPTNDDVLGYQIKATERYDGCLIKQPHNPSGIYILGIVLNDYSEVSYRGWKDSSEIQRACYWRADVPKPGYFVPQAALWPLSDLPETSELQTHRTTGLW*
Ga0114973_101067174	F072334	GGA	MTEKVGTPDTQLQKVTLLVAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEITKVMQILSVQDCE