Scaffold Ga0114973_10103028

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10103028
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1620
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F018001	Metagenome	237	Y
F038242	Metagenome	166	N
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_101030282	F038242	N/A	MLTIKNIKELELNFCHQRGLREITETTNKLGDHFYCFNFGPISDGKGWNKETEVRLCRDIHIGRGKYQLFSMGLQLVTESWVDINDIKSKGGLASEISKVLAKSQHWWNTEATK*
Ga0114973_101030283	F007690	N/A	MLTIKNILKLQNQPIWDGWEVKLIYEGNHNDTYIFELHRESAWGNGDCKIMLERNGKTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL*
Ga0114973_101030284	F018001	N/A	MLTIGNIGDLKGAQLNDWKVLDAGEDIRAELGKNIYILTFGRLDKGVMQDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDSIVWPANNIRNKDAFFGRILYKINEEYYKRK*
Ga0114973_101030285	F084228	N/A	AGKRIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTISLNRIGQLQRNMFKPDTTAYFINYNGEQTDVCVTKDWILNPENFISQLKYIINEYHNKQS*