Scaffold Ga0114973_10088295

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10088295
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002207	Metagenome / Metatranscriptome	583	Y
F036238	Metagenome	170	Y
F060900	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100882951	F002207	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETYGMGDISTMGFPTKITQVSYSNPVFSFHNIHSYKDDGITDEEYACQPSRGNYDIQNDPDWFRKSVEFAKTQ
Ga0114973_100882952	F036238	AGGCGG	MGDRANFGFRQSNGETIVLYGHWAGHDMLGNLASAVEAARSRWTDESYATRICVSHLVGDQWHDTTGWGLTVNSILDNEHKIPLIDWSTSTFSLHEEAPWSESTEYKVRGMQDEPMFTMTLDSFINKYARATV*
Ga0114973_100882956	F060900	N/A	AIAEALSIELIKEVEFTASIEVTGIYSYNILENDYELDLESEVTDALYADSNNGNIEIGDTEVCNVREC*