Scaffold Ga0114973_10076569

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10076569
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1927
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007798	Metagenome / Metatranscriptome	344	Y
F019824	Metagenome / Metatranscriptome	227	Y
F079812	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100765692	F079812	N/A	MSTKYITDGNNRNIGYTKDMGSVTYAHDKNGKDVGYYNANNKTTFDSKGKRYGTGNLTNALVFEAARKN*
Ga0114973_100765695	F007798	AGG	MKDTTLKQLVRDRKGQPRGMVVATVIDGSIRFGWSHTNTKAGDRFDKCKALTIALGRAENGWGSKVNVPSSTIKVLNKMFDRSVRYYKNVPVSGI*
Ga0114973_100765696	F019824	N/A	MEKYITDNFTGSIDDLLNHCTNLDIDKVEAQVKVEEKEACIQIIMKEANCDESEANDIYNEILLTETKTTVDKMVADGILYVSGHNEDGEPLFNLTELGKSVRNELNDNK*