Scaffold Ga0114973_10072043

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10072043
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1995
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F034467	Metagenome	174	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100720432	F007519	N/A	MTTGIENLKLEQQRKGRGLGKKPALFCTSLRLPKDVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS*
Ga0114973_100720434	F034467	GAG	MLAKEYEMKEEMKYQSKAIPLRGCNDPKFKWVSAASTDIRRTFRKARLLIRITNGAAYESRT*
Ga0114973_100720435	F080867	N/A	MNTLSLSNIVVGEDLQKSLDKEGLKLTGVYPMLDPVVSRLASLNPLWTFVINNSGMHMGSARVAAGFIVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPNERIQKAKDAAERVVSRASWNKERERTQHQSLVKNEMLAWAETKGHALFLEYLKAEAIPSLKHKVTTSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDTGKYLVRIGDKVDLYDDNTLPVDMRMKMGMLKLVEDEQYLTDVGCKVTSEIFVLLVDELTNVSEGV*