Scaffold Ga0114973_10058404

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10058404
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2257
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F043818	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100584044	F043818	GGAG	MKLKNTIATILEESQDEYFCQFCTKRKVATLPICSCSGNWFKLADFDFDTQFSIAQQIFNSQKGTTNKESD*
Ga0114973_100584045	F015970	AGGAG	VTASNKALWEAYQELNDDDIMDAIQGSVAIPLAIKSDDWEYAQYFIKERIENKMQRRAELALYESIKTPSIDSDDELRTLRTLWLKKNYKGDKDET*
Ga0114973_100584046	F042184	AGG	MEFDIELYDLDIEIKTWVEWDYDPEYSPNEGVYNKFNWAVYLQVGNTCIEITDELSSEESKSIEEQIEEFSRDSI*