NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10051996

Scaffold Ga0114973_10051996


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10051996 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2417
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F005630Metagenome / Metatranscriptome394N
F007751Metagenome / Metatranscriptome345Y
F010836Metagenome / Metatranscriptome298Y
F105160Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100519962F105160N/AMTIEEQMDIELILTEASAWGLQNEVEQSAKQFINEGHKVVDAYQYAYEDWVK*
Ga0114973_100519964F002303N/AMDIREQCRERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIFLLAMCKANCFVNQF*
Ga0114973_100519966F005630N/AMSKNLYEVGGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGIYSVSDLYDFVIN*
Ga0114973_100519968F007751N/AMNLVSELKSVIGKDVSQNQSPTCRGKLIKVGKLYSTFESVPSPYAKFTKPEFIGVKYKVPNWIAWNSFFY*
Ga0114973_100519969F010836N/AMSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELSNDSDYVDYGKTDKHELRSFPSRALGSIRKYAQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLSKSAATKYAKLAEKKAEKLKNEIVEQLESIYNNYSDRYGVTAVFSNGETIYHKL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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