Scaffold Ga0114973_10048560

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10048560
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100485602	F068766	AGGAG	MTTEDNVVAFHPKNKLVNFYEIAGEDGNAVWGGEDPHSAVEWLKRSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGTQ*
Ga0114973_100485603	F055450	GGAGG	MMEASNKRLVGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIQTAEGRGAPTTKGNSNKDTNKSNNGGEA*
Ga0114973_100485604	F014590	GGAGG	VRTKHLSLVTQQHSDTLVEKSNALSPYGPVRAGLTTSQITPEARLTELLNSLESAVESLNYKSFVAYDTLNTAMENLRVVLSNIVTEEDGTDTL*
Ga0114973_100485605	F013279	AGGAG	MNYDYKCDKCNSELTIERSIHAEVSDPMCFDCHTTMSRVWSSPSVTFKGKGFYSTGG*