Scaffold Ga0114973_10035572

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10035572
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2993
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F027417	Metagenome	194	Y
F029678	Metagenome	187	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1003557211	F029678	GGAGG	MSRVTGFTIFNKETGQKLATLPLTIPIGATVEAYERDGQSVGWGWEESNE*
Ga0114973_1003557212	F001477	GGAGG	MSNIYTIHPPKSSLILFYEVTTPEGENEWGGANAEHAIQWLSLAPTGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL*
Ga0114973_100355725	F085348	AGGAGG	MQPTGIALKVTGKDGKISYPSYEAYGWERVNAVINGTLALPNVAMVEIEDINGREVA*
Ga0114973_100355726	F027417	GAGG	MQYDYRVTFVTDYLTITTNVELELDDYTGNCSGEAYSQATFNAMNNIKDEIGRIDESIINDITVTLILDDEEIELEGEDE*
Ga0114973_100355728	F000821	GGAG	MNEEYLRAKANLCLNQAEIDLKQEEIAKAIKNLERANSALSRIFNMEEDEKK*