Scaffold Ga0114973_10034263

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10034263
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3059
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100342634	F012108	GAG	MIANGCSLDMFDKIVCALEVALGVNQRRMVTITGGLTLDNRIHSIKAIRQHTGWGLKEAKDWSDYFVGGWHYDKFVPAKPGAKQSITLKTPEAAEALLRDLVGLGCEGFLS*
Ga0114973_100342635	F006543	N/A	LETITIFGEDKMKKFAFAVDIVADELDRDSVVDSIRECLTNSLASDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEVAGDAHDGKVETETVA*
Ga0114973_100342638	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAGQTEKQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRKALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*