Scaffold Ga0114973_10032278

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10032278
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3164
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F062447	Metagenome / Metatranscriptome	130	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100322785	F104483	GGAG	MKKKLIDKIDLVIEDIINIQELIDFDTSDSSEYDLDSVVNLLAEIRGKVNNEIEEVEKIDLKDL*
Ga0114973_100322787	F024040	N/A	MNFFVSGHNWLAKVALEKDIKKSDRYTEATTRAIESLLDQEEKEGVKLKVLNYDDYGLGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL*
Ga0114973_100322788	F062447	AGGAGG	MNQKIFWEKNSRIKGIVPKEQIIEKTQTHKFPCEAVTIRMSNVNDKNPTAVAYFHGKEAKQTSWNGTNYIVAETKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDSVRETLNKL*
Ga0114973_100322789	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLVIDGKIVPYVGEQDNYEFDKKLGCHKDKTTGLELSLDEKEYEYLLDEIIFSLQMIVDEDNIDINLDRLYEVYPKGFDPIEDRQMFLTPQGDGTSLVEFESKDN