Scaffold Ga0114973_10031970

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10031970
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3179
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F017485	Metagenome	240	Y
F027416	Metagenome	194	N
F042325	Metagenome	158	Y
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100319702	F042325	N/A	MLKIENIQKIEGKKIHTPHAHWVVMGIEERKNDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFNSTLNEWRMYNDQDNGYTTLTKGLLTLKMFVGILGGQLHSFSN*
Ga0114973_100319703	F103248	N/A	VVNYIVSVIKTNNMLTIKNIDKIINITSPLPYKWYISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYKLYKNFDQSKINRWLSLHQISPYFIKQAIDKMLNE*
Ga0114973_100319705	F009960	N/A	MLTLENIQKIDGYSLEVKGKGYYFKGWDNTTNDVAYFTLAAVSLSNPLIRITLHKTGLMVFDDIQNKDCYFYGVAVDGLLFHYTKEKLNTPAEFRNTIEQILNGI*
Ga0114973_100319706	F027416	GGA	MLTIENIQKLKGCKVGANGMVWKILQTKELDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYSFLRLIKKEIERALC*
Ga0114973_100319707	F017485	N/A	MNNEIKTKDIIEGITFILMIVATIGMFCLLYEVKELRELTKGVSNLQTIRK*