NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10030247

Scaffold Ga0114973_10030247


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10030247 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3286
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016936Metagenome / Metatranscriptome243Y
F024061Metagenome / Metatranscriptome207N
F029363Metagenome / Metatranscriptome188Y
F042326Metagenome158Y
F059946Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100302472F059946N/AMNKRKSDEAKRIQCDAMLAQFMPVRTIAQALRMSRGTVSERAKRAGMTRHYITEAEVRLLFKNRIGGVAK*
Ga0114973_100302473F042326AGGAMISDALILAAIFASGGLIGYIIGTARGRKRGRDEQWVESFLAYEKREKARRETDGRFKSKTK*
Ga0114973_100302476F024061AGGGGGMNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVEEENQTEPKAKATFAVEWDALKHTPTVTVKIGWSVRYKDETESMVDPLQSKLGLVEDAK*
Ga0114973_100302478F016936GGAGGMNLELIHAELIRIREALEARPYAAGAPAAKPAPTSTKTDEVPLPTEVIANAGEVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTATAANIDEGDVSF*
Ga0114973_100302479F029363AGGAMENDDDNEMLWAAQDLRTMTSCKAEIAISRRVTIKPNAIKESWDYQITFGDILNRGAWRWECAQADTLEAAMDITRAQITAQGDEKARELLQLKDAAAKLGLKLVEATA*
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