Scaffold Ga0114973_10027632

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10027632
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3456
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1002763210	F009140	AGG	MLEMTHSHTDNNSVSFHYQRYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSTTEKYDGKELRMSVFRRGCYDFLQLPSRFGDSFVPR
Ga0114973_100276322	F002764	AGGAG	MKEPEDEAFDELSRRQGDWGLQGSRKHQILRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTAYVRGMKK*
Ga0114973_100276323	F011742	AGGAG	MQTIEFVPFDWVDDDFNPEIDCIEVDYEWHEADDSVGLIAYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIKRNDQEIADERT*
Ga0114973_100276328	F046258	GGAG	MKLLTIAIKRVLSFFEIVTLQPSLPILLRDKTPAKKTLPTLAITDPKFVYQSAACTDITHTFEKAKHERLQRLQHDADGNRKQDQGTFPQVSKQKLRRVHG*
Ga0114973_100276329	F012211	AGGAG	MPTDEERFNYECYAIVQELDPEDISDAIDDSVALVEAIKANNAEDVAAIVMHRVELKVCRRAELRVFDVVKTPWIDDIEELQHYRNLRIERVQKALDERKITAAKMDAPFKEMFDE*