Scaffold Ga0114973_10027280

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10027280
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3484
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014617	Metagenome / Metatranscriptome	261	Y
F044491	Metagenome	154	N
F080030	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100272802	F044491	AGGCGG	MSYYTTASKQLISNYACISTLEPTEITIGENITVSALGVPFNGTFKVLDMPQYEFTGVDSTTGEFQFDVNVPRPNQIIYAATGSNVQYVVTYDGSVEYTQTCTWITVAALITFLGVTISNPSDDYTLATQATNAANLFCYRRRQESGYHDALSTSPGADATLGTLMYGAALWRSRGSIETAFAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0114973_100272804	F014617	AGG	MTYTIASSKVGVIGEPFIPADGINVAALLEGGFIVKQSTPKPKKPAKTSTDTNEEI*
Ga0114973_100272806	F080030	AGCAGG	MRIKLKLIRTVNAEPEYLYTTLFSTALWEEKFNKKPMDAEQSGWRDWSFWVYTLLKVKGEKLPDDFMKWLEENPEMTILPEADLTNPNPTDAALIDGN*