Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10026149 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10026149 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3571
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3571

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F005090	Metagenome / Metatranscriptome	412	N
F005630	Metagenome / Metatranscriptome	394	N
F011392	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100261492	F005630	N/A	MSKNLYEVDGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGINSVDELYDFVIN*
Ga0114973_100261493	F005090	N/A	MKKKMKFVWCGINFELPAECLRTTDYWGKQLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSASVYVCNADGSNLDMASKEWNEINSFVRQMCGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHIENKAPFGSWPDVVRMLRGMIAGEYVWGPLSLEKAIEKVRDYKVTEPTLKKALELI*
Ga0114973_100261494	F011392	N/A	LCIVKIKISNMNLSIKELNELIYSLGITASKGIFVNKELNASLIDKLYGELNSKIAEEATDEFTDELLGGDLEFSSHYVSNDEADEDYRSTLIQDSNRYEDSHMTTSFPIADPFTSVSEDYDNYLSKLKQRGYITQALLDYVDKKGAVSHGELETYYKIITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYSDAKYVIKVANPSNWVVA*
Ga0114973_100261496	F003542	N/A	MNTMLKNVKNPVQFDYDLFDSKIGYDSVNKKYLIRVYDYLVFEMDNNPAPKWTGIMVKMLGDNPNNCNPSSYYSSVRRCLKEIDVCSFDTTKRCIVKGKNWDRFVSDEDWSWFIMRTGSREYSTIIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10026149

Overview

Ecosystem & Geography

Associated Families

Sequences