Scaffold Ga0114973_10023871

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10023871
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3765
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1002387111	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHYFAEVVNNVTMSKIEISNATEDIKNPSKELLEKADDLLSIQATEDFDAGK*
Ga0114973_100238717	F020665	AGGAGG	MSKKSREIKLVKVHEYKAAKIIVEVDDELFEAMAQAGRKHVAKDKVACFSYALNKALLELCEEVK*
Ga0114973_100238718	F022371	AGGAG	MLCLLDLKDIVWVIGWFILYSWLILSAIYCAGYIILKLIDFIKEEFEL*
Ga0114973_100238719	F021063	N/A	LQQLAGEVALQAIRDLRLLRKRGMVKGMKIVKDHQGVPLNDALEYKSSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLQENDYALPT*