Scaffold Ga0114973_10022499

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10022499
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3894
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1002249910	F036564	GGAG	MKLGRVCVDLNYIVDMDNKEMVEHAIECLYEDLMQGIKYGNITNWIDVIEDKNAKEDMIPEFLLEKENE*
Ga0114973_1002249911	F032548	N/A	MKHNKEMEKAIRLLEELVNQADEDCPQDCRTMHFVNVLEEASEFIMEYKNTK*
Ga0114973_1002249912	F027756	GGAG	MKLKDLIDRKILYLNFPINKYAIQEGKVTEISPAEKCIKINADWHLISNIRIIELFSEKERPALGFN*
Ga0114973_100224992	F096610	N/A	MANRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTNKLRASDLLTK*
Ga0114973_100224994	F049419	N/A	MKLPKLNILDLLTTYIFFGLVYGTIVTLTWNYLFESTFNIHLSILQGFGIHLMCRILFGNTNTNYISNFYSQKTPDLDKIDEYLKEIQSDLDKEADEVERQYEDLDKKD*
Ga0114973_100224999	F064403	GGAG	MNNGIIRHINPRDMILENLKKSYLKEHPATLVDRILGYLNNLTDHQLCELYAEKYETNSKYIAEQFEFNF*