Scaffold Ga0114973_10021477

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10021477
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4002
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003863	Metagenome	464	Y
F033321	Metagenome	177	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1002147711	F075748	GGAGG	MNKQEVLSIIDSTQSFNAYIGSMDCLHGLALSLVIDVAGVDGEEWTDEECLETIKEIVDLTNAYKNTHDWSD*
Ga0114973_1002147714	F000821	AGGAGG	MNEEYLRAKFDLCISEAEKDLQEEEIARAIKNLERANSALSRIFNLEEDENDN*
Ga0114973_1002147718	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVINPDSRLTIAIHTRANSVPDVAGRTDYDSTDESYNGGEA*
Ga0114973_100214777	F033321	AGGGGG	MSRELEVLREEYWRVRGNPIFDNPADYCILLDLIIDKIEELEGKENEM*