NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10021237

Scaffold Ga0114973_10021237


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10021237 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4032
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F013279Metagenome / Metatranscriptome272Y
F027417Metagenome194Y
F031792Metagenome181Y
F044984Metagenome / Metatranscriptome153Y
F083706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1002123711F044984GGAGGMTDEVKRRMATASRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGRTDYESADESYNGGEA*
Ga0114973_1002123714F013279AGGCGGMQYDYRCPDCNSELTVERSIHEEPREPSCFDCHIPMVRKWGSPAITFKGKGFYSNGG*
Ga0114973_100212372F083706AGGAGGMEHLTPRGWLVFGILIGLSTWGLWEVASHLLWTGSGWEWCEDLLECEREGK*
Ga0114973_100212375F027417GGAGGMNYDYRVTFVTDYLTITTNVCLELDDTIGNLSDEAYEQASINGMNNIEDEIGKIDETVINDITVTLLLDDEEIELGSFGEFPPVHVEVIE*
Ga0114973_100212376F031792GGAGGMSYEPELNDPIFYAEEGELPVKCFRCGDPLDRDDIVWADVEGQVKEKEGNDTAWCVVCLPSEGESNE*
Ga0114973_100212377F000821GGAGMNEEYLKAKFDLCISEAEKDLQQEEIARAIKNLERANSALSRLFGLEEEAENE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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