Scaffold Ga0114973_10021104

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10021104
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4044
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F026210	Metagenome / Metatranscriptome	198	Y
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100211042	F066486	N/A	MKNKTLFKNDTYYLKVGKFKKKAVYDAKVDMSDQMENTFENLGREHITKEQYINIGFNYAVAKGIEYTKVLVNKKK*
Ga0114973_100211045	F026210	AGGAG	MTHLINANRLNYDAKYPQSVDTSVNEDAKMFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVEDTSTRI*
Ga0114973_100211047	F071966	GAGG	MLSLLGSEMNIKGYIFKPFYLLLGVLYFITLLALLGSLYIMLYIRDTLEIVLNNIEKERNKYKRLK*
Ga0114973_100211049	F011914	N/A	MITNNQIKALDENELAYLYYCLNTEWNSLNMGYEFDYYVMKAFKNNTIHKLLDKYSDNLTDENKGIIMEILKKLETNI*