Scaffold Ga0114973_10019607

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10019607
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4218
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y
F046686	Metagenome	151	Y
F058947	Metagenome	134	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100196072	F083706	AGGAGG	MMQHVTPRGWLVAGILVGLAVWGLWEVASHLLWTGSGWEWCEDLLECEREGK*
Ga0114973_100196073	F031792	GGA	VLVIVASVGESELMGYEPELNDPVFYAGDYEEAVKCFICGDQLDPDDIVWANVEGQIVKEGNDTTWCVVCLPSEGESND*
Ga0114973_100196074	F058947	GGAG	MISCELQDLEEIMGKAGVLLTGNAYDKAQDYLQDHCVCATYNYLLGYKIGRE*
Ga0114973_100196075	F000821	AGGAGG	MNREYLEAKVDLCLNQAEIDLQQEEIARAIKNLERANSALSRLFGLEEETE*
Ga0114973_100196078	F044984	GAGG	MATASRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPNVAGRTDYESADESYDGGEA*
Ga0114973_100196079	F046686	GGA	VRAGLTTSQITNEARLSELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALSNIATEEGGTDADRC*