Scaffold Ga0114973_10018382

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10018382
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4379
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F023833	Metagenome	208	Y
F027777	Metagenome / Metatranscriptome	193	N
F074559	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1001838211	F074559	AGG	MKAQNPWQKLLSEHIKDKFAPPPPAGYHTREEVSKLWGKSMNTTSRMLSQMLLEKKVDMKRHPFIIPRKDHRVVRNLKIYKILPAKHPHK*
Ga0114973_100183824	F023833	AGGA	MKSHSELIQDILNDVRSKAADLERERCANLVQQLADGTEDAVITGILNEVVVAIRRLADVSR*
Ga0114973_100183826	F027777	AGGA	MSEELPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQKKK*
Ga0114973_100183828	F005702	GGA	VIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKEPKEPKLLLPSKNWVGRN*
Ga0114973_100183829	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPAWQKQRIRW*