Scaffold Ga0114973_10017907

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10017907
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4443
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Listeriaceae → Listeria → Listeria booriae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F009125	Metagenome	322	Y
F013396	Metagenome	271	N
F074549	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1001790710	F009125	N/A	MTSDNIRATLTAATPAAAMVSLSQINEFAALVGTLLGIAFLLWRWRKQWKAGNAKNLD*
Ga0114973_100179076	F003579	N/A	MINIPISPYTMGSPNAPKTGVIFSVRYIQYTDPTAVADCHLLDAEGVEIMPVGLVPATAEQCAVWVNDEKFAGVLAVNAGFELPAE*
Ga0114973_100179078	F013396	N/A	MTLKRSLLLAVLALGLVVVLGLALRSERVLLAGLPTRVVVASEAEAWTLAGPSAVVVLGTGSMAPYIPAAPAGADPLRTVSALAVLVSGASYSDIKAGTLCIYVPVWAGRNVMHQAAQIDAGGWIMTGLGNKTYENRERVTAANFVGIVARTYVWGR*
Ga0114973_100179079	F074549	GGGGG	MSLTDILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLAAAEKEAAWNAFTASQKDSNATLVIPAGTWPWVGSIYVLVDAFRQLTRPGLTWAGFIFLTSVYFSASPEVRATMSPEIQFGSWTLIFWWVGARYNKSK*