Scaffold Ga0114973_10017723

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10017723
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4469
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012344	Metagenome / Metatranscriptome	281	Y
F015339	Metagenome	255	Y
F020904	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100177231	F020904	N/A	IGSNFDDFLKKNNIELKRDINWAVKMLENGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWVVVQSKSFKDVLDDLNAGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVAEVNKIQEEHRENRK*
Ga0114973_100177235	F015339	AGG	MQIEPKIYSEEYIKGRIYSFVRFRKYLHEIASIFCEEFQYDKDDIIEVSLSDDGKTVWVHFDSGTIGFASELLWDKNVRETFRKQNEPTYPY*
Ga0114973_100177238	F012344	GGAG	MKFTEVLDSLMEGKPITRTSWEQKYMYYDKDEICFVLVRNPDDIESRYELWSLTLDLYPSDLIADDWDIDYWDTEEDKEE*